Course Schedule

Course: Identifying regulatory elements in the genome

Location: West Research Building C218-220

2013-09-16      Day 1: RNA sequencing methodologies and applications
9:00-10:00 Welcome and general introduction (Piero Carninci)
10:00-11:00 Applications of RNA sequencing (Hiroshi Tarui)
11:00-11:30 Coffee break
11:30-12:00 Applications of RNA sequencing (Hiroshi Tarui)
12:00-13:00 Lunch
13:00-14:30 Cap Analysis Gene Expression (Masayoshi Itoh)
14:30-15:00 Coffee break
15:00-15:30 Cap Analysis Gene Expression (Masayoshi Itoh)
15:30-17:00 Single molecule sequencing (Sotaro Uemura)
17:00-18:00 Additional lecture?
2013-09-17 Day 2: Bioinformatic analyses
09:00-10:30 Promoter identification and network building (Timo Lassmann)
10:30-11:00 High throughput sequencing data analysis (Hideya Kawaji)
11:00-11:30 Coffee break
11:30-12:30 High throughput sequencing data analysis (Hideya Kawaji)
12:30-13:30 Lunch
13:30-14:30 Genome browsers (Jessica Severin TBA)
14:30-15:00 Coffee break
15:00-16:00 Data analysis using R (Dave Tang)
16:00-18:00 Hands on example of working with CAGE data (Dave Tang)
2013-09-18 Day 3: Applications of CAGE
9:00-10:30 Regulatory networks using CAGE (Michiel de Hoon)
10:30-11:00 Coffee break
11:00-12:00 nanoCAGE (Charles Plessy)
12:00-13:00 Lunch
13:00-14:30 FANTOM5 (Alistair Forrest)
14:30-15:00 Coffee break
15:00-16:15 Additional lecture?
16:15-17:00 Close (Piero Carninci)